BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002C10LP1|AL424940
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig992 1198 0.0
3x_Contig1054 513 e-145
>3x_Contig992
Length = 4146
Score = 1198 bits (596), Expect = 0.0
Identities = 663/693 (95%), Gaps = 3/693 (0%)
Strand = Plus / Minus
Query: 1 gatcactatcatcagatttgaaacgcctcgatgccatcaagacactagtggataaatkat 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 732 gatcactatcatcagatttgaaacgaatcgatgccatcaagacactagtggataaa-gat 674
Query: 61 gttaaacaattggaaaattttgctataatgttgcmacaactagtcagtaagggattcaaa 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 673 gttaaacaattggaaaattttgctataatgttgcaacaactagtcagtaagggattcaaa 614
Query: 121 atatcaaacgttgagatagataagttcttccygcgaaaaattaatcacatacaaacacaa 180
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 613 atatcaaacgttgagatagataagttcttccag-gaaaaattaatcacatacaaacacaa 555
Query: 181 attaaatgactacmacgacactctaagcmatattgacgacgcagtgtcaggtctagagaa 240
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 554 attaaatgactacaacgacactctaagcaatattgacgacgcagtgtcaggtctagagaa 495
Query: 241 tgatctctttgggaacgattcatccgaagatgatgataccaaggtcggtgttaaccytat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 tgatctctttgggaacgattcatccgaagatgatgataccaaggtcggtgttaacattat 435
Query: 301 cgtcagcgttctaatcgaagagttcaaactattcatggatacagctgamagaatagcaga 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 434 cgtcagcgttctaatcgaagagttcaaactattcatggatacagctgaaagaatagcaga 375
Query: 361 actgcatcagaagtgtaaagvmataatagttaaatagtcgatattattcttttaatacta 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actgcatcagaagtgtaaagaaataatagttaaatagtcgatattattcttttaatacta 315
Query: 421 taammmaagaaagcgttcaagaacatattacctattgatgcagatcactaactcctgcmc 480
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 314 taaaaaaagaaagcgttcaagaacatattacctattgatgcagatcactaactcctgcac 255
Query: 481 atgcmctgcacctgcaccgcatctgccacttgtctcttcgcagtcttctcttctcaggct 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atgcactgcacctgcaccgcatctgccacttgtctcttcgcagtcttctcttctcaggct 195
Query: 541 ccctttatcttcccttccttatttaggtcaatgagttgtgaaavvmgggaatttgatacg 600
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 194 ccctttatcttcccttccttatttaggtcaatgagttgtgaaaaaagggaatttcatacg 135
Query: 601 acaaatataasagggataaggnttaasavatggttaacaaggagtaacagttttcccgga 660
|||||||||| ||| |||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 134 acaaatataaaaggaataaggattaaaaaatggttaacaaggagtaacagttttcccgga 75
Query: 661 aacgaaaatgtgaaacaaagaacaaaggaaagg 693
||||||||||||||| |||||| ||||||||||
Sbjct: 74 aacgaaaatgtgaaa-aaagaaaaaaggaaagg 43
>3x_Contig1054
Length = 4453
Score = 513 bits (255), Expect = e-145
Identities = 266/270 (98%)
Strand = Plus / Plus
Query: 683 caaaggaaaggcgtcctggttttgtgattatactcaagaaatatatataggactgataag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 caaaggaaaggcgtcctggttttgtgattatactcaagaaatatatataggactgataag 68
Query: 743 aattttagaacgttgctggcaactaactatcattattggaatatcagagacatattaagt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aattttagaacgttgctggcaactaactatcattattggaatatcagagacatattaagt 128
Query: 803 gtgacattttagtattaattctgtcagtataaacttattgtagatcaagcttcaggcgta 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gtgacattttagtattaattctgtcagtataaacttattgtagatcaagcttcaggcgta 188
Query: 863 aaatcaaggagctaggagattttttttttgattaaagcgaagatngggctgaagtaaaag 922
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 189 aaatcaaggagctaggagattttttttttgattaaagcgaagcgatggctgaagtaaaag 248
Query: 923 atagatgtacatcagtggatggaaatgaca 952
||||||||||||||||||||||||||||||
Sbjct: 249 atagatgtacatcagtggatggaaatgaca 278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7654
Number of Sequences: 1807
Number of extensions: 7654
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (101.0 bits)